PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0093700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 142aa    MW: 16464.8 Da    PI: 11.9002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0093700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-153785348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +WT+e+d  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  ORGLA06G0093700.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhrSRRSPAQCRDRWRDHL 85
                       7********************************9************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5753089IPR017930Myb domain
SMARTSM007172.3E-83487IPR001005SANT/Myb domain
CDDcd001671.44E-83785No hitNo description
PfamPF002496.1E-143785IPR001005SANT/Myb domain
SuperFamilySSF466899.2E-1737110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-1637102IPR009057Homeodomain-like
SMARTSM007175090128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR  60
VAAQMPRHRS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELARLCLRLD DGRSSRAVKR  120
RWRELRKSDA FLGKLWRRPL SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A8e-13291221103MYB21
3osf_D8e-13291221103MYB21
3osg_A8e-13291221103MYB21
3osg_D8e-13291221103MYB21
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120RAVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642267.14e-94PREDICTED: transcription factor MYB44-like
TrEMBLI1Q1C49e-96I1Q1C4_ORYGL; Uncharacterized protein
STRINGORGLA06G0093700.13e-95(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-14myb domain protein r1